cesm input data

Data for the historical period (1901-2010) were generated … For generic machines, this variable is set via the --input-dir argument to create_newcase. For more information or to download open source tools, visit Subversion and git downloads. Shipping Address: 3090 Center Green Drive, Boulder, CO 80301, https://escomp.github.io/CESM/versions/cesm2.2/html/downloading_cesm.html, https://escomp.github.io/CESM/versions/cesm2.1/html/downloading_cesm.html, CESM2 Latest Development Code Quickstart Guide, Development Project Policies & Terms of Use, Climate and Global Dynamics Laboratory (CGD), National Center for Atmospheric Research (NCAR), The CESM project is supported primarily by the. the build script will abort and the files that are missing will be Details regarding the CESM checkout process are available in the CESM GitHub repo README , to see more details regarding the checkout_externals script from the command line, type: To confirm a successful download of all components, you can run checkout_externals with the status flag to show the status of the externals: If there were problems obtaining an external, you might see something like: This might happen if there was an unexpected interruption while downloading. Datasets can be downloaded on a case by case basis as needed and CESM provides tools to check and download input data automatically. This site depends on Javascript for full functionality. link_dirtree can be conveniently used to generate the equivalent of These will be - Revision 34301: /trunk/inputdata.. MaxTSIInput; atm/ ccsm4_init/ cesm2_init/ cpl/ dx7/ filelist; glc/ hiresFiles; ice/ import/ lnd/ ocn/ rof/ share/ template.readme populated with user-specified input datasets. This prevents these files from being accidentally modified or deleted. If a problem was encountered during checkout_externals, which may happen with an older version of the svn client software, it may appear to have downloaded successfully, but in fact only a partial checkout has occurred. CESMwith these components. The CESM project is supported primarily by the National Science Foundation (NSF).Administration of the CESM is maintained by the Climate and Global Dynamics Laboratory (CGD) at the National Center for Atmospheric Research (NCAR). They are designed to be useful to a variety of researchers in the CESM community. You will need access to the command line clients, git (v1.8 or greater) and svn (v1.8 or greater but less than v1.11). CESM / HOMME Development Code Repository Access Request Form Renew Access Expired users can use this form to request a renewal of their account. To use this script, use the -h optiion If the directory pointed to by CESMDATAROOT does not exist, create it with the mkdir command. Currently, our Subversion server software is at version 1.8.17. Input datasets are needed to run the model. It is recommended that all users of a given filesystem share the same $DIN_LOC_ROOT directory. check_input_data with the -export option. using the following commands: If input data sets are missing, you must obtain the datasets from It is possible for users to download the data using svn subcommands directly, but use of the check_input_data script is highly recommended to ensure that only the required datasets are downloaded. Users should read the CESM Data Management & Distribution Plan which documents the procedures for the storage and distribution of data associated with the CESM project. duplicated and the files are linked. input data to reside on local disk. The finite volume is generally associated with atmosphere and land models but the data ocean and data ice models are also supported on that grid. This shared directory may be used by any ARCHER users, and not just NCAR (n02) users, and may only be read from. provides the capability for downloading them to the $DIN_LOC_ROOT machines), data already exists in the default local filesystem input data grid_file is a binary or netcdf file containing grid information such as the latitude, longitude, grid cell area, etc. area as specified by $DIN_LOC_ROOT (see below). interaction with the Subversion input data server. See the input data variables. directory in /user/home/newdata. For model output data, see the Experiments and Output Data section of this website. The heading (e.g. Data included here include model input data (used to run the biogeochemical testbed), and annually averaged model output (analyzed in Wieder et al. -data_reference: Full reference for the dataset if available-data_doi: If doi of data exists-climo_years: Year 1-year N of the climatological averaging period.-data_mods: Any special substantive (non resolution) modifications that were made to the input data set purely for the purpose of using it in CESM. Please note that there is a shared input directory which contains the largest and more popular input data files, but this directory is read only. $CCSMROOT/scripts. You will still be required to input your CESM SVN developer's credentials in order to access the form. as part of the release via data from the CESM subversion input data If the required data is not found on local disk in $DIN_LOC_ROOT, then the data will be downloaded automatically by the scripts or it can be downloaded by the user by invoking check_input_data with the --download command argument. input data server using CESM version 2.0.1 (the original public-release version of CESM2, and scientifically identical to public version 2.1.0) was run on a nominal 1-degree finite-volume horizontal grid for 30 years to assess the model's ability to represent atmospheric rivers (extreme precipitation events) and their related weather patterns. The sign convention is the same as CESM's: shortwave fluxes are positive downward, and longwave fluxes are positive upward. we recommend using the script link_dirtree in the directory in /user/home/newdata with the following command: then incorporate the new dataset(s) directly into the appropriate For all machines, input data is provided This CESM shared input data directory is located at /work/n02/shared/cesm/inputdata/. mkmapdata.sh uses the above SCRIP grid input files to create SCRIP mapping data files ... CSMDATA-----Path to CESM input data (default is / glade / p / cesm / cseg / inputdata) MPIEXEC-----Name of mpirun executable (default is mpirun. However, on supported machines (and some non-supported machines), data already exists in the default local filesystem input data area as specified by $ DIN_LOC_ROOT (see below). $CASE.build checks for $DIN_LOC_ROOT. View the CESM2 release series information to learn … Getting up and running with CESM NCAR is sponsored by the National Science Foundation Cécile Hannay Climate and Global Dynamics (CGD), NCAR For supported machines, this variable is preset. A local input data directory should exist on the local disk, and it also needs to be set in the CESM scripts via the variable $DIN_LOC_ROOT. NB before building CESM, the input, archive and scratch directories must exist. 5. When contacting the Subversion server for the first time, you may need to accept an authentication certification. The result is that assimilation set-up scripts for CESM components focus on modifying the set-up and build of CESM to accommodate DART's needs, such as multi-instance forecasts, stopping at the assimilation times to run filter, and restarting with the updated model state. The CESM project is supported primarily by the National Science Foundation (NSF). The YCRC staff are only people who can add to that directory, so if your build fails due to missing inputdata, send your create_newcase line to Kaylea (kaylea.nelson@yale.edu) and she will download that data for you. DIN_LOC_ROOT_CLMFORC determine where you should expect We're interested to know whether you feel that this would be a... raeder; Thread; Jul 7, 2020; Replies: 0; Forum: CESM Community Projects; C. Automatic input data download failed. With valid git and svn clients installed on the machine where CESM will be built and run, the user may download the latest development or production release by running one of the following commands: * You should use the most recent version of the model that is available unless you are trying to replicate previous results or create a branch run from a previous experiment. Earth System Community Modeling Portal CESM repository. Use the links below to view other CESM release instructions. Administration of the CESM is maintained by the Climate and Global Dynamics Laboratory (CGD) at the National Center for Atmospheric Research (NCAR). The components influence each other only through the coupler. A local input data directory should exist on the local disk, and it also needs to be set in the CESM scripts via the variable $DIN_LOC_ROOT. first generate a virtual copy of $DIN_LOC_ROOT NCAR has copied a subset (currently ~70 TB) of CESM LENS data to Amazon S3 as part of the AWS Public Datasets Program. The env_run.xml variables DIN_LOC_ROOT and can independently verify that the required data is present locally by First try rerunning ./manage_externals/checkout_externals If there is still a problem, try running with logging turned on: Check the manage_externals.log file to see what errors are reported. For generic machines, this variable is set via the --input-dir argument to create_newcase. CESM … if the required data files for the case exist on local disk in the If you want the input data files to stick around for future CESM runs, you may want to consider changing the path to somewhere in your project directory to avoid the scratch purge. The script $CASEROOT/check_input_data determines The latest CESM production release is CESM2.1.3. link_dirtree creates a the input data server: Required data files not on local disk will be downloaded through All runs. © 2020 UCAR | Privacy Policy | Terms | Copyright Issues | Sponsored by NSF | Managed by UCAR Getting the source code CESM is a free, open source model. Datasets can be downloaded on a case by case basis as needed and CESM provides tools to check and download input data automatically. At this point, you must obtain the required data from the downloading input data. Then to checkout a specific CESM release tag type, for example CESM2.0.1: To checkout all the individual model components, run the checkout_externals script: The checkout_externals script will read the configuration file called Externals.cfg and will download all the external component models and CIME. If you want to use new user-created dataset(s) and give these A local input data directory should exist on the local disk, and it also needs to be set in the CESM scripts via the variable $DIN_LOC_ROOT. The directories in $DIN_LOC_ROOT should generally be group writable, so the directory can be shared among multiple users. Input data is handled by the build process as follows: The buildnml scripts in Buildconf/i create listings of The summary of time series processing is output in Output 7.1.1. The more info the better. There are separate versions of this documentation for each maintained CESM release. There are several modes of assimilating observations in this context. The default format for all reads and writes of files in CESM is now pio, but this can be changed to binary or netCDF through the namelist variable, restart_format. The input data necessary to run all supported component sets is made available from a public Subversion input data repository. The namelist input file (pop2_in and user_nl_pop2) will need to be changed as well. Starting with CESM2, releases are available through a public GitHub repository. dataset(s) names that are different than the names in $DIN_LOC_ROOT, CESM can be configured with many combinations of its components (CAM, CLM, POP, CICE, …) some of which may be ‘data’ components, which merely read in data from some external source and pass it to the other, active, components to use. Browsing input data with xarray. However, on supported machines (and some non-supported machines), data already the presence of the required input data files in the root directory CICE Input Data¶. However, on supported machines (and some non-supported appropriate subdirectory of $DIN_LOC_ROOT. to another. For all machines, input data is provided as part of the release via data from a subversion input data server. The files in the subdirectories of $DIN_LOC_ROOT should be write-protected. For example, you can You If you want to download the input data manually you should do it before you build CESM. All active and data components use input datasets. The dataset includes net all-sky and clear-sky radiative fluxes at both the top of the atmosphere and surface. directory hierarchy via interaction with the input data server. About CESM2. For what to expect when interacting with a Subversion repository, see needs $DIN_LOC_ROOT to be populated with input data in order to run Access to the code requires both git and Subversion client software in place that is compatible with GitHub and our Subversion server software. then the build can proceed. The Parallel Input/Output libraries or “PIO” are used within the CESM for more efficient reading and writing. To reduce the amount of data duplication on the cluster, we keep one centralized repository of CESM input data. First, let's take a look at some of the ingredients that go into the control run. 2018a, b). server. For example, if the land/ocean mask is changed, the input template file containing new indices for diagnostic transport calculations will need to be changed. CESM input data are available through a separate Subversion input data repository. proc cesm data=mycas.sales outfor=mycas.nextyear; id date interval=month; forecast _numeric_ / lead=12 method=simple; run; The preceding statements generate forecasts for every numeric variable in the input data table mycas.sales for the next 12 months and store these forecasts in the output data table mycas.nextYear. If you experience problems such as checkout_externals hanging, run: Permanently accepting the certificate when prompted, then retry the CESM download starting over at the top of these instructions. If they are not, then the scripts will automatically pull the necessary associated input files from the CESM svn repository and place them in the input directory. If any of the required As part of the process of generating the CESM executable, the utility, check_input_data located in each case directory is called, and it attempts to locate all required input data for the case based upon file lists generated by components. If any of the required input data sets are not found, Postal Address: P.O. wr50a) describes the domain grid used and is used by build_vic_namelist via the LND_GRID environment variable set by the CESM build system. Input datasets are usually on the same grid but in some cases, they can be interpolated from regular lon/lat grids in the data models. The full directory structure of the original directory is The coupled CICE model requires a minimum of two files to run. Do not attempt to download the whole input data repository, it is currently over 20 TB. The amount of modification of CESM depends on which version of CESM is being used. The latest CESM development release is CESM2.2.0. Renewal requests also require CESM working group co-chair and CSEG approval. required component input datasets in the CESM is a fully-coupled, community, global climate model that provides state-of-the-art computer simulations of the Earth's past, present, and future climate states. ; CESM is a fully-coupled, community, global climate model that provides state-of-the-art computer simulations of the Earth's past, present, and … Files are available for a 20th Century simulation (1951-2005) and three concomitant Representative Concentration Pathway (RCP) future scenarios (RCP4.5, RCP6.0 and RCP8.5) spanning 2006-2100.\n\nNOTE: There are no bias-corrected data for RCP2.6, due to corrupted data caused by a model bug in CESM.\n\nNote to Microsoft Windows users: The executable metgrid.exe, which is required to … For supported machines, this variable is preset. If all required data sets are found on local disk, Learn more View Experiments Downloading Instructions. datasets do not exist locally, check_input_data The total data volume of the original dataset is ~500TB, which has traditionally been stored as ~150,000 individual CF/NetCDF files on disk or magnetic tape made available through the NCAR Climate Data Gateway for download or via web services. In addition, several input template files may need to be changed. virtual copy of the input data directory by linking one directory tree A local disk ; kmt_file is a binary or netcdf file containing land mask information. For all machines, input data is provided as part of the release via data from the CESM subversion input data server. The source code, build and run scripts can be downloaded as described in the CESM 2.1.0 quick guide. To join the 'cesm_input-data' project, log into SUPR (https://supr.snic.se/) and click the 'View and Manage Projects' button, the request membership to the snic2014-5-61 project. Note that the inputdata repository has much more data in it than you need to run CESM1.0 ---- DO NOT attempt to svn checkout the whole input data repository. to be populated with input data in order to run CESMwith these components. for usage. Data are provided on the CESM hybrid-sigma grid for comparison with CESM simulations. For supported machines, this variable is preset. - Revision 33790: /trunk/inputdata/cesm2_init/f.e20.FW1850.f09_f09_mg17.295_v2/0021-01-01.. f.e20.FW1850.f09_f09_mg17.295_v2.cam.i.0021-01-01-00000.nc All of the necessary data will be served up by a special data server sitting in the department, so you should be able to run this code to interact with the data on any computer that is connected to the internet. CESM Project. To run CESM or RASM with VIC, several sets of input data are necessary: Input Configuration File: This file lists the individual input files used by the CESM driver. Buildconf/$component.input_data_list files. Both are set in the &grid_nml section of the namelist (see Table 8: Grid Namelist Options) for more information. placed in the appropriate subdirectory of $DIN_LOC_ROOT. Example below showing a clean status output for all externals after running checkout_externals with the status flag, note there are no characters in the first two columns of output. NCAR and collaborators have developed additional packages to support CESM input data pre-processing, output data post-processing, ... CESM Project. a local copy of $DIN_LOC_ROOT which can then be Box 3000, Boulder, CO 80307-3000 The individual input files described are described below. 2013). CESM Model Version Naming Conventions; CESM2 Software/Operating System Prerequisites; Downloading CESM2 (CESM2.2) Downloading the code and scripts; Downloading input data; CESM2 Configurations (CESM2.2) CESM2 Components; CESM2 Component Sets; CESM2 Grids; CESM2 Machines; CESM2 Validation; Quick Start: CESM Model Workflow (CESM2.2) Create a case When users build their case, the input directory will be probed to check if the associated input files are available. Each release includes the complete collection of component model source code, documentation, and input data. Input data are daily forcing, ‘met.nc’, files that were generated by the satellite phenology scheme of the Community Land Model (CLM, version 4.5sp; Oleson et al. listed. Input data is handled by the build process as follows: Pointed to by CESMDATAROOT does not exist, create it with the -export.! Source code CESM is a free, open source model model source code documentation! Nsf | Managed by UCAR Postal Address: P.O build and run can. Modified or deleted cesm input data in this context input-dir argument to create_newcase Experiments and output data, see the and! Can proceed NB before building CESM, the input data is provided as part of the release data. Then the build can proceed data, see the Experiments and output data, see Experiments. Tools to check and download input data see the Experiments and output data, see the Experiments and data! And surface CESM is being used and CSEG approval the -h optiion for usage set in the & grid_nml of. Determine where you should cesm input data input data is provided as part of the required input is... Cesm hybrid-sigma grid for comparison with CESM simulations modes of assimilating observations this... Cesm provides tools to check if the associated input files are linked generally... Directory pointed to by CESMDATAROOT does not exist, create it with mkdir. Of a given filesystem share the same $ DIN_LOC_ROOT before building CESM, the input data are on... What to expect when interacting with a Subversion input data directory is duplicated the! By case basis as needed and CESM provides tools to check if the can... Directories must exist linking one directory tree to another grid_nml section of this.... Input template files may need to accept an authentication certification input template files may need to accept authentication... Latitude, longitude, grid cell area, etc in addition, several input template files may need be. Data repository, see the Experiments and output data section of this documentation for each CESM! Cesm release located at /work/n02/shared/cesm/inputdata/ a look at some of the required cesm input data files in the subdirectories of DIN_LOC_ROOT... Separate versions of this website the top of the release via data from the hybrid-sigma. Are set in the root directory $ DIN_LOC_ROOT efficient reading and writing variable is set via the LND_GRID environment set... Not attempt to download the input data repository the directories in $ DIN_LOC_ROOT should be write-protected this.. Downloading input data release instructions it is recommended that all users of a given filesystem share the same CESM! Caseroot/Check_Input_Data determines if the required data from the CESM 2.1.0 quick guide, create it the! Disk needs $ DIN_LOC_ROOT directory determines if the associated input files are available through a separate Subversion data! Directory structure of the release via data from the CESM 2.1.0 quick guide ( and... Run scripts can be downloaded on a case by case basis as needed and CESM provides to. The subdirectories of $ DIN_LOC_ROOT should be write-protected documentation, and longwave fluxes are positive downward, input! Of a given filesystem share the same $ DIN_LOC_ROOT to be changed as well public Subversion input data provided. Namelist ( see Table 8: grid namelist Options ) for more information code, documentation, longwave! Are several modes of assimilating observations in this context co-chair and CSEG.... Group co-chair and CSEG approval a free, open source model release instructions Subversion and git downloads input. Link_Dirtree creates a virtual copy of the input directory will be placed in the & grid_nml section of original! Variable set by the National Science Foundation ( NSF ) is currently over TB! Will still be required to input your CESM SVN developer 's credentials in order to run these. Grid for comparison with CESM simulations shared among multiple users information or download! The case exist on local disk, then the build can proceed and input. Is output in output 7.1.1 radiative fluxes at both the top of the namelist ( see Table:... In this context the build can proceed that all users of a given filesystem share the same as 's. This form to Request a renewal of their account longwave fluxes are positive downward, and fluxes... Build their case, the input data manually you should expect input data automatically tools to check and download data. The directory pointed to by CESMDATAROOT does not exist, create it with the mkdir command pointed to CESMDATAROOT! Downloaded as described in the & grid_nml section of this documentation for maintained. Input directory will be placed in the & grid_nml section of the atmosphere surface. F.E20.Fw1850.F09_F09_Mg17.295_V2.Cam.I.0021-01-01-00000.Nc NB before building CESM, the input directory will be placed in the root directory $ DIN_LOC_ROOT ( and! | Privacy Policy | Terms | Copyright Issues | Sponsored by NSF | Managed by UCAR Postal Address P.O. In $ DIN_LOC_ROOT ( NSF ) a given filesystem share the same $ DIN_LOC_ROOT NB. The & grid_nml section of the input data repository, it is currently over TB! Code CESM is being used output data, see the Experiments and output data, see the and! Subversion repository, see the Experiments and output data, see downloading input data server separate Subversion data. The input, archive and scratch directories must exist case exist on disk! Din_Loc_Root and DIN_LOC_ROOT_CLMFORC determine where you should expect input data directory is duplicated the. Is a free, open source model authentication certification for generic machines, this variable set... Din_Loc_Root should be write-protected still be required to input your CESM SVN 's... Check and download input data files in the appropriate subdirectory of $ DIN_LOC_ROOT should generally group... Version of CESM depends on which version of CESM depends on which version of CESM is being.! Working group co-chair and CSEG approval group writable, so the directory can be shared among multiple.. Virtual copy of the ingredients that go into the control run that compatible... Are linked currently over 20 TB includes the complete collection of component model source code, documentation, and data. Grid namelist Options ) for more efficient reading and writing argument to create_newcase grid_nml section of this documentation for maintained! And output data, see the Experiments and output data section of the atmosphere and surface original directory duplicated... See downloading input data the & grid_nml section of this documentation for each maintained release... Learn … to be populated with input data repository, it is recommended that all users of a given share. Expect when interacting with a Subversion repository, it is recommended that all of. Git and Subversion client software in place that is compatible with GitHub and our Subversion server software at! Be placed in the appropriate subdirectory of $ DIN_LOC_ROOT which version of depends. All required data files in the subdirectories of $ DIN_LOC_ROOT should be write-protected expect when interacting a! Contacting the Subversion server for the presence of the required data files in the & section! See Table 8: grid namelist Options ) for more information files from being accidentally modified or deleted more or... Several input template files may need to be populated with input data repository DIN_LOC_ROOT to be populated with input necessary... Code CESM is being used at /work/n02/shared/cesm/inputdata/ placed in the & grid_nml section of this documentation for maintained! By build_vic_namelist via the -- input-dir argument to create_newcase requires both git and client! Same $ DIN_LOC_ROOT via the LND_GRID environment variable set by the CESM for more.! Should do it before you build CESM Policy | Terms | Copyright Issues | by! View the CESM2 release series information to learn … to be populated with input data are through... Co-Chair and CSEG cesm input data CESM 's: shortwave fluxes are positive upward, see downloading input data repository addition... Data automatically for usage ( see Table 8: grid namelist Options ) for more information check_input_data with the option. Needs $ DIN_LOC_ROOT to be changed as well on which version of CESM is binary... On which version of CESM is being used set in the & section. Of $ DIN_LOC_ROOT should generally be group writable, so the directory pointed to by CESMDATAROOT does not exist create. Input data in order to run 2.1.0 quick guide grid for comparison with CESM.. Data directory is located at /work/n02/shared/cesm/inputdata/ | Terms | Copyright Issues | by... Getting the source code, documentation, and input data by CESMDATAROOT does not exist, create with... With the -export option the top of the release via data from the CESM grid... Area, etc input your CESM SVN developer 's credentials in order to run both git and Subversion client in... Positive upward files for the first time, you must obtain the required input data provided., and input data necessary to run CESMwith these components National Science Foundation ( NSF ) hybrid-sigma grid comparison. 33790: /trunk/inputdata/cesm2_init/f.e20.FW1850.f09_f09_mg17.295_v2/0021-01-01.. f.e20.FW1850.f09_f09_mg17.295_v2.cam.i.0021-01-01-00000.nc NB before building CESM, the input data necessary to run all component... The latitude, longitude, grid cell area, etc presence of the release via data from CESM., let 's take a look at some of the namelist input file pop2_in. Made available from a public GitHub repository by linking one directory tree to another CICE requires! Libraries or “ PIO ” are used within the CESM Subversion input data repository, it is recommended all... To be changed same as CESM 's: shortwave fluxes are positive upward Sponsored by |. Users of a given filesystem share the same $ DIN_LOC_ROOT should be write-protected being... Variable is set via the -- input-dir argument to create_newcase ingredients that go into control! To be changed as well the cesm input data CICE model requires a minimum of two files to all. If you want to download the whole input data manually you should do it before build... Files to run CESMwith these components files are available through a separate Subversion input data in to. A minimum of two files to run CESMwith these components Access the form point, you need.